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    Zcchc13 zinc finger, CCHC domain containing 13 [ Mus musculus (house mouse) ]

    Gene ID: 75064, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Zcchc13provided by MGI
    Official Full Name
    zinc finger, CCHC domain containing 13provided by MGI
    Primary source
    MGI:MGI:1922314
    See related
    Ensembl:ENSMUSG00000031330 AllianceGenome:MGI:1922314
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cnbp2; 4930513O09Rik
    Summary
    Predicted to enable mRNA binding activity; single-stranded RNA binding activity; and translation regulator activity. Predicted to be involved in positive regulation of cytoplasmic translation. Predicted to be active in cytoplasm. Is expressed in central nervous system and sensory organ. Orthologous to human ZCCHC13 (zinc finger CCHC-type containing 13). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Zcchc13 in Genome Data Viewer
    Location:
    X D; X 46.26 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (102674187..102675277)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (103630586..103631664)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47698 Neighboring gene microRNA 374b Neighboring gene microRNA 374c Neighboring gene Ftx transcript, Xist regulator, non-protein coding Neighboring gene STARR-seq mESC enhancer starr_47699 Neighboring gene predicted gene 9159 Neighboring gene STARR-positive B cell enhancer ABC_E5733 Neighboring gene predicted gene 53059 Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 2 Neighboring gene predicted pseudogene 6222

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Chureau C, et al. Genome Res, 2002 Jun. PMID 12045143, Free PMC Article
    2. Identification of an imprinted gene cluster in the X-inactivation center. Kobayashi S, et al. PLoS One, 2013. PMID 23940725, Free PMC Article
    3. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    4. A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. McKee AE, et al. BMC Dev Biol, 2005 Jul 20. PMID 16033648, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables translation regulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCHC domain-containing protein 13
    Names
    cellular nucleic acid binding protein 2
    cellular nucleic acid binding-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029158.3 → NP_083434.1  zinc finger CCHC domain-containing protein 13

      See identical proteins and their annotated locations for NP_083434.1

      Status: VALIDATED

      Source sequence(s)
      AL683845
      Consensus CDS
      CCDS30329.1
      UniProtKB/TrEMBL
      Q9D548
      Related
      ENSMUSP00000033692.8, ENSMUST00000033692.9
      Conserved Domains (1) summary
      PTZ00368
      Location:46 → 167
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      102674187..102675277
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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