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    AT5G19720 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832092, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G19720
    Gene description
    Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
    Primary source
    Araport:AT5G19720
    Locus tag
    AT5G19720
    See related
    TAIR:AT5G19720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29J13.140; T29J13_140
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    Genomic context

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    See AT5G19720 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (6667664..6668700)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene histidine containing phosphotransfer protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables aminoacyl-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA aminoacylation for protein translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
    NP_197473.1
    • Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, glutamine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: glutaminyl-tRNA aminoacylation, glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutaminyl-tRNA synthetase, class Ic (InterPro:IPR004514), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (TAIR:AT1G25350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6667664..6668700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121977.2 → NP_197473.1  Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197473.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y7Z1, A0A654G2I8, F4K2L4
      Conserved Domains (1) summary
      PLN02859
      Location:1 → 170
      PLN02859; glutamine-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version

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