AT5G19730 Pectin lyase-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

Gene symbol: AT5G19730
Gene description: Pectin lyase-like superfamily protein
Primary source: Araport:AT5G19730
Locus tag: AT5G19730
See related: TAIR:AT5G19730
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T29J13.150; T29J13_150
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Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

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NM_121978.4

Function	Evidence Code	Pubs
enables pectinesterase activity	IDA Inferred from Direct Assay more info	PubMed
enables pectinesterase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cell wall modification	IEA Inferred from Electronic Annotation more info
involved_in cotyledon vascular tissue pattern formation	IDA Inferred from Direct Assay more info	PubMed
involved_in pectin catabolic process	IEA Inferred from Electronic Annotation more info
involved_in response to abscisic acid	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to heat	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in apoplast	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in cytoplasm	HDA more info	PubMed
located_in plant-type cell wall	HDA more info	PubMed

NP_197474.1

Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

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The following sections contain reference sequences that belong to a specific genome build. Explain