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    RAP2.11 uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832099, updated on 7-Sep-2023

    Summary

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    Gene symbol
    RAP2.11
    Gene description
    uncharacterized protein
    Primary source
    Araport:AT5G19790
    Locus tag
    AT5G19790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    related to AP2 11; T29J13.210; T29J13_210
    Summary
    encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
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    Genomic context

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    See RAP2.11 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (6689108..6690040, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene tubulin alpha-3 Neighboring gene tubulin alpha-5 Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Proline-rich extensin-like family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis AP2/ERF transcription factor RAP2.11 modulates plant response to low-potassium conditions. Kim MJ, et al. Mol Plant, 2012 Sep. PMID 22406475
    2. EFD Is an ERF transcription factor involved in the control of nodule number and differentiation in Medicago truncatula. Vernié T, et al. Plant Cell, 2008 Oct. PMID 18978033, Free PMC Article
    3. The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Gong W, et al. Mol Plant, 2008 Jan. PMID 19802365, Free PMC Article
    4. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article
    5. The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. Okamuro JK, et al. Proc Natl Acad Sci U S A, 1997 Jun 24. PMID 9192694, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RAP2.11 regulates AtHAK5 expression under low-K+ conditions.
      Title: The Arabidopsis AP2/ERF transcription factor RAP2.11 modulates plant response to low-potassium conditions.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_121984.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to potassium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within post-embryonic root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to reactive oxygen species IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_197480.1
    • related to AP2 11 (RAP2.11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root hair, epidermis, primary root differentiation zone; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: cytokinin response factor 4 (TAIR:AT4G27950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6689108..6690040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121984.2 → NP_197480.1  uncharacterized protein AT5G19790 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197480.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23112, Q6J9S1
      UniProtKB/TrEMBL
      A0A178UQ22, A0A5S9Y6A6, A0A654G2L8
      Conserved Domains (1) summary
      smart00380
      Location:21 → 84
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6J9S1.1

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