RbcX2 Chaperonin-like RbcX protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: RbcX2
Gene description: Chaperonin-like RbcX protein
Primary source: Araport:AT5G19855
Locus tag: AT5G19855
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtRbcX2; homologue of cyanobacterial RbcX 2
Summary: Encodes a chloroplast stromal localized RbcX protein that acts as a chaperone in the folding of Rubisco.
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Genomic context

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See RbcX2 in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 4

Sequence:: Chromosome: 5; NC_003076.8 (6711943..6713937, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

AtRbcX2 is localized in the stromal fraction of chloroplasts and has chaperone activity during Rubisco biogenesis.
Title: Initial characteristics of RbcX proteins from Arabidopsis thaliana.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_121991.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein folding chaperone	IDA Inferred from Direct Assay more info	PubMed
enables protein folding chaperone	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chaperone-mediated protein folding	IDA Inferred from Direct Assay more info	PubMed
involved_in ribulose bisphosphate carboxylase complex assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in chloroplast stroma	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrion	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Chaperonin-like RbcX protein

NP_568382.1

Chaperonin-like RbcX protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin-like RbcX (InterPro:IPR003435); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

6711943..6713937 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001343626.1 → NP_001330979.1 Chaperonin-like RbcX protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8BCG6
NM_121991.4 → NP_568382.1 Chaperonin-like RbcX protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568382.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8L9X2

UniProtKB/TrEMBL

A0A178UCQ2, A0A5S9Y5P2

Conserved Domains (1) summary

pfam02341
Location:94 → 160

RcbX; RbcX protein