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    AT5G52180 transmembrane protein 161AB protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835294, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G52180
    Gene description
    transmembrane protein 161AB protein
    Primary source
    Araport:AT5G52180
    Locus tag
    AT5G52180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17P19.8; F17P19_8
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    Genomic context

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    See AT5G52180 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (21200040..21201610, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase BIG BROTHER-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene homeodomain GLABROUS 7 Neighboring gene Sugar isomerase (SIS) family protein Neighboring gene phosphoprotein phosphatase inhibitor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_124597.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 161AB protein
    NP_200031.1
    • LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21200040..21201610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124597.5 → NP_200031.1  transmembrane protein 161AB protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200031.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UCF4, Q9LTK2
      Conserved Domains (1) summary
      pfam10268
      Location:220 → 452
      Tmemb_161AB; Predicted transmembrane protein 161AB
    Nucleotide Protein
    Heading Accession and Version

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