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    DUF2 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837684, updated on 7-Sep-2023

    Summary

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    Gene symbol
    DUF2
    Gene description
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2)
    Primary source
    Araport:AT1G11420
    Locus tag
    AT1G11420
    See related
    TAIR:AT1G11420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATDUF2; DOMAIN OF UNKNOWN FUNCTION 724 2; T23J18.9; T23J18_9
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
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    Genomic context

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    See DUF2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (3844461..3846956, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PLAC8 family protein Neighboring gene Protein kinase superfamily protein Neighboring gene partner of Y14-MAGO Neighboring gene ncRNA Neighboring gene S-locus lectin protein kinase family protein Neighboring gene plastid developmental protein DAG Neighboring gene uncharacterized protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtDuf2 was detected in trichomes and the cells at the base of trichomes.
      Title: Characterization of DUF724 gene family in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_101015.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2)
    NP_172609.1
    • DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 603 Blast hits to 525 proteins in 93 species: Archae - 19; Bacteria - 36; Metazoa - 149; Fungi - 17; Plants - 302; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3844461..3846956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101015.2 → NP_172609.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172609.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I8W1, Q9LPZ2
      UniProtKB/TrEMBL
      A0A178W4H8, A0A654E8Z8, A0A7G2DUP7
      Conserved Domains (3) summary
      smart00743
      Location:150 → 211
      Agenet; Tudor-like domain present in plant sequences
      pfam05266
      Location:405 → 603
      DUF724; Protein of unknown function (DUF724)
      pfam05641
      Location:10 → 72
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I8W1.1

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