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    Ranbp17 RAN binding protein 17 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303029, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ranbp17provided by RGD
    Official Full Name
    RAN binding protein 17provided by RGD
    Primary source
    RGD:1562576
    See related
    Ensembl:ENSRNOG00000005042 AllianceGenome:RGD:1562576
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562576
    Summary
    Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to human RANBP17 (RAN binding protein 17). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 35.9), Brain (RPKM 24.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ranbp17 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (18304634..18607162, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (17800406..18102947, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (18139763..18445347, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546482 Neighboring gene nucleophosmin 1 Neighboring gene T-cell leukemia, homeobox 3 Neighboring gene spindle and kinetochore-associated protein 2 pseudogene Neighboring gene uncharacterized LOC108352198 Neighboring gene uncharacterized LOC120095244 Neighboring gene gamma-aminobutyric acid type A receptor subunit pi Neighboring gene potassium voltage-gated channel interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nuclear export signal receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ran-binding protein 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106994.1 → NP_001100464.1  ran-binding protein 17

      See identical proteins and their annotated locations for NP_001100464.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A6HDG6, D3ZYN8
      Related
      ENSRNOP00000056640.2, ENSRNOT00000059895.3
      Conserved Domains (1) summary
      pfam03810
      Location:30 → 95
      IBN_N; Importin-beta N-terminal domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      18304634..18607162 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268960.1 → XP_063125030.1  ran-binding protein 17 isoform X4

    2. XM_063268959.1 → XP_063125029.1  ran-binding protein 17 isoform X3

    3. XM_008767582.4 → XP_008765804.1  ran-binding protein 17 isoform X1

      UniProtKB/TrEMBL
      A0A0G2KAF6
      Conserved Domains (1) summary
      pfam03810
      Location:30 → 95
      IBN_N; Importin-beta N-terminal domain

    4. XM_063268961.1 → XP_063125031.1  ran-binding protein 17 isoform X5

    5. XM_017597247.3 → XP_017452736.1  ran-binding protein 17 isoform X2

    6. XM_039085897.2 → XP_038941825.1  ran-binding protein 17 isoform X6

    RNA

    1. XR_010055172.1 RNA Sequence

    2. XR_010055171.1 RNA Sequence

    3. XR_010055174.1 RNA Sequence

    4. XR_010055173.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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