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    Fam193a family with sequence similarity 193, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305452, updated on 6-Jun-2024

    Summary

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    Symbol
    Fam193aprovided by RGD
    Full Name
    family with sequence similarity 193, member Aprovided by RGD
    Primary source
    RGD:1309634
    See related
    Ensembl:ENSRNOG00000013832 AllianceGenome:RGD:1309634
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309634
    Summary
    Orthologous to human FAM193A (family with sequence similarity 193 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 142.7), Spleen (RPKM 114.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam193a in Genome Data Viewer
    Location:
    14q21
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (80480742..80607086, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (76250103..76382525, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (81515897..81638919, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene SH3-domain binding protein 2 Neighboring gene U1 spliceosomal RNA Neighboring gene TNFAIP3 interacting protein 2 Neighboring gene U6 snRNA-associated Sm-like protein LSm3 Neighboring gene small nucleolar RNA U13 Neighboring gene cilia and flagella associated protein 99 Neighboring gene uncharacterized LOC103693090 Neighboring gene ring finger protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    protein FAM193A
    Names
    protein FAM193A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427458.1 → NP_001414387.1  protein FAM193A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I6GBK1, A6IK31

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      80480742..80607086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273154.1 → XP_063129224.1  protein FAM193A isoform X2

      UniProtKB/TrEMBL
      A0A8I6APE8, A6IK31

    2. XM_223536.10 → XP_223536.5  protein FAM193A isoform X1

      See identical proteins and their annotated locations for XP_223536.5

      UniProtKB/TrEMBL
      A6IK31, D3ZIG8
      Related
      ENSRNOP00000018616.7
      Conserved Domains (3) summary
      pfam11679
      Location:860 → 940
      DUF3275; Protein of unknown function (DUF3275)
      pfam13863
      Location:1023 → 1098
      DUF4200; Domain of unknown function (DUF4200)
      pfam15914
      Location:1380 → 1433
      FAM193_C; FAM193 family C-terminal

    3. XM_039092826.2 → XP_038948754.1  protein FAM193A isoform X3

      Conserved Domains (1) summary
      PRK14950
      Location:950 → 1056
      PRK14950; DNA polymerase III subunits gamma and tau; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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