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    AA545190 EST AA545190 [ Mus musculus (house mouse) ]

    Gene ID: 57866, updated on 8-Feb-2024

    Summary

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    Official Symbol
    AA545190provided by MGI
    Official Full Name
    EST AA545190provided by MGI
    Primary source
    MGI:MGI:1889333
    See related
    AllianceGenome:MGI:1889333
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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    Genomic context

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    See AA545190 in Genome Data Viewer
    Location:
    6 A1; 6 4.86 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (10971467..10974377, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (10971468..10974378, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15147 Neighboring gene STARR-seq mESC enhancer starr_15148 Neighboring gene STARR-seq mESC enhancer starr_15149 Neighboring gene predicted gene, 26058 Neighboring gene eukaryotic translation initiation factor 5B pseudogene Neighboring gene STARR-seq mESC enhancer starr_15152 Neighboring gene STARR-seq mESC enhancer starr_15153 Neighboring gene STARR-seq mESC enhancer starr_15154 Neighboring gene STARR-seq mESC enhancer starr_15155 Neighboring gene STARR-seq mESC enhancer starr_15156 Neighboring gene STARR-seq mESC enhancer starr_15157 Neighboring gene STARR-seq mESC enhancer starr_15158 Neighboring gene STARR-seq mESC enhancer starr_15159 Neighboring gene STARR-seq mESC enhancer starr_15161 Neighboring gene STARR-seq mESC enhancer starr_15162 Neighboring gene STARR-seq mESC enhancer starr_15163 Neighboring gene STARR-seq mESC enhancer starr_15164 Neighboring gene STARR-seq mESC enhancer starr_15166 Neighboring gene Ndufa4, mitochondrial complex associated Neighboring gene PHD finger protein 14 Neighboring gene STARR-seq mESC enhancer starr_15168 Neighboring gene STARR-seq mESC enhancer starr_15169 Neighboring gene mitochondrial ribosomal protein L32 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033776.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK139915, BG082120, DV646556

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      10971467..10974377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases