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    CG42404 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41842, updated on 10-May-2024

    Summary

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    Official Symbol
    CG42404provided by FlyBase
    Primary source
    FLYBASE:FBgn0259823
    Locus tag
    Dmel_CG42404
    See related
    AllianceGenome:FB:FBgn0259823
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:SD12744; CG31154; CG34128; CG4285; Dmel\CG42404; lincRNA.S6902
    Old locus tag
    Dmel_CG34128; Dmel_CG4285
    Summary
    Predicted to be active in membrane. Is expressed in embryonic/larval central nervous system; eye disc; larval caeca region; photoreceptor cell; and ring gland. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG42404 in Genome Data Viewer
    Location:
    88E5-88E6; 3-56 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15250094..15257765)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11075816..11083487)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Heat shock protein 70 cognate 4 Neighboring gene Ammonium transporter Neighboring gene eukaryotic translation initiation factor 2 subunit gamma Neighboring gene Suppressor of variegation 3-9 Neighboring gene Set

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An Interscholastic Network To Generate LexA Enhancer Trap Lines in Drosophila. Kockel L, et al. G3 (Bethesda), 2019 Jul 9. PMID 31040111, Free PMC Article
    2. Comparison of parallel high-throughput RNA sequencing between knockout of TDP-43 and its overexpression reveals primarily nonreciprocal and nonoverlapping gene expression changes in the central nervous system of Drosophila. Hazelett DJ, et al. G3 (Bethesda), 2012 Jul. PMID 22870402, Free PMC Article
    3. A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. Molnar C, et al. Genetics, 2006 Nov. PMID 16980395, Free PMC Article
    4. Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach. Pazos Obregón F, et al. BMC Genomics, 2015 Sep 15. PMID 26370122, Free PMC Article
    5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42404-PD
    CG42404-PE
    CG42404-PF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      15250094..15257765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001043248.2 → NP_001036713.2  uncharacterized protein Dmel_CG42404, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001036713.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0C4DHG7
      Conserved Domains (1) summary
      cl17735
      Location:47 → 89
      VWC; von Willebrand factor type C domain

    2. NM_001260189.2 → NP_001247118.1  uncharacterized protein Dmel_CG42404, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001247118.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VFA8
      Conserved Domains (1) summary
      smart00214
      Location:32 → 89
      VWC; von Willebrand factor (vWF) type C domain

    3. NM_142180.4 → NP_650437.4  uncharacterized protein Dmel_CG42404, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650437.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VFA8
      Conserved Domains (1) summary
      smart00214
      Location:32 → 89
      VWC; von Willebrand factor (vWF) type C domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0C4DHG7 A0A0C4DHG7
    Q8MRY6 Q8MRY6
    Q9VFA8 Q9VFA8

    Gene LinkOut

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