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    Bicral BICRA like chromatin remodeling complex associated protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301235, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Bicralprovided by RGD
    Official Full Name
    BICRA like chromatin remodeling complex associated proteinprovided by RGD
    Primary source
    RGD:1305680
    See related
    Ensembl:ENSRNOG00000016229 AllianceGenome:RGD:1305680
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Gltscr1l; RGD1305680
    Summary
    Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be part of SWI/SNF complex. Orthologous to human BICRAL (BICRA like chromatin remodeling complex associated protein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 50.5), Spleen (RPKM 47.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bicral in Genome Data Viewer
    Location:
    9q12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (21597886..21682985)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (14100253..14185368)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (16406577..16495751)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene peripherin 2 Neighboring gene tubulin folding cofactor C Neighboring gene uncharacterized LOC134480555 Neighboring gene small nucleolar RNA SNORA19 Neighboring gene ribosomal protein L7-like 1 Neighboring gene smilar to human chromosome 6 open reading frame 226

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes. Alpsoy A, et al. J Biol Chem, 2018 Mar 16. PMID 29374058, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of SWI/SNF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of SWI/SNF complex ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    BRD4-interacting chromatin-remodeling complex-associated protein-like
    Names
    BRD4 interacting chromatin remodeling complex associated protein like
    BRD4 interacting chromatin remodelling complex associated protein like
    GLTSCR1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106888.1 → NP_001100358.1  BRD4-interacting chromatin-remodeling complex-associated protein-like

      See identical proteins and their annotated locations for NP_001100358.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473987
      UniProtKB/TrEMBL
      A0A0G2K049, A6JIL7, D4A240
      Related
      ENSRNOP00000021762.5, ENSRNOT00000021762.8
      Conserved Domains (1) summary
      pfam15249
      Location:712 → 812
      GLTSCR1; Conserved region of unknown function on GLTSCR protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      21597886..21682985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083177.2 → XP_038939105.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

      UniProtKB/TrEMBL
      A0A0G2K049, A6JIL7, D4A240
      Conserved Domains (1) summary
      pfam15249
      Location:712 → 812
      GLTSCR1; Conserved region of unknown function on GLTSCR protein

    2. XM_008766846.4 → XP_008765068.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

      See identical proteins and their annotated locations for XP_008765068.1

      UniProtKB/TrEMBL
      A0A0G2K049, A6JIL7, D4A240
      Conserved Domains (1) summary
      pfam15249
      Location:712 → 812
      GLTSCR1; Conserved region of unknown function on GLTSCR protein

    3. XM_039083178.2 → XP_038939106.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

      UniProtKB/TrEMBL
      A0A0G2K049, A6JIL7, D4A240
      Conserved Domains (1) summary
      pfam15249
      Location:712 → 812
      GLTSCR1; Conserved region of unknown function on GLTSCR protein

    4. XM_063266847.1 → XP_063122917.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

      UniProtKB/TrEMBL
      A6JIL7, D4A240

    5. XM_006244508.5 → XP_006244570.2  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X2

      UniProtKB/TrEMBL
      A0A0G2K049, A6JIL7, D4A240
      Conserved Domains (1) summary
      pfam15249
      Location:712 → 812
      GLTSCR1; Conserved region of unknown function on GLTSCR protein

    6. XM_063266846.1 → XP_063122916.1  BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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