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    Taf7l2 Taf7l2 [ Mus musculus (house mouse) ]

    Gene ID: 619332, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Taf7l2provided by MGI
    Official Full Name
    Taf7l2provided by MGI
    Primary source
    MGI:MGI:6274337
    See related
    Ensembl:ENSMUSG00000121803 AllianceGenome:MGI:6274337
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4933416C03Rik
    Summary
    Orthologous to human TAF7L (TATA-box binding protein associated factor 7 like). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See Taf7l2 in Genome Data Viewer
    Location:
    10 D2; 10 64.48 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (115947569..115949822, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (116111664..116113917, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S3A pseudogene Neighboring gene STARR-seq mESC enhancer starr_27945 Neighboring gene STARR-seq mESC enhancer starr_27946 Neighboring gene STARR-seq mESC enhancer starr_27947 Neighboring gene RIKEN cDNA 4930422I22 gene Neighboring gene tetraspanin 8 Neighboring gene STARR-seq mESC enhancer starr_27948 Neighboring gene protein tyrosine phosphatase receptor type R Neighboring gene STARR-seq mESC enhancer starr_27949 Neighboring gene STARR-seq mESC enhancer starr_27950 Neighboring gene STARR-seq mESC enhancer starr_27951 Neighboring gene STARR-seq mESC enhancer starr_27952 Neighboring gene STARR-seq mESC enhancer starr_27953 Neighboring gene protein tyrosine phosphatase receptor type B Neighboring gene STARR-seq mESC enhancer starr_27954 Neighboring gene STARR-seq mESC enhancer starr_27955 Neighboring gene predicted gene, 26495 Neighboring gene potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1 Neighboring gene potassium large conductance calcium-activated channel, subfamily M, beta member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Amplification of a broad transcriptional program by a common factor triggers the meiotic cell cycle in mice. Kojima ML, et al. Elife, 2019 Feb 27. PMID 30810530, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    contributes_to RNA polymerase II general transcription initiation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA polymerase II preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC619332

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001161855.1 → NP_001155327.1  uncharacterized protein LOC619332

      See identical proteins and their annotated locations for NP_001155327.1

      Status: VALIDATED

      Source sequence(s)
      AC124522, AK133409, BB615688
      Consensus CDS
      CCDS48692.1
      UniProtKB/TrEMBL
      Q3V063
      Related
      ENSMUST00000220165.2
      Conserved Domains (1) summary
      pfam04658
      Location:12 → 188
      TAFII55_N; TAFII55 protein conserved region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      115947569..115949822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033821.2: Suppressed sequence

      Description
      NM_001033821.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    2. NR_003651.1: Suppressed sequence

      Description
      NR_003651.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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