Scgb1d4 secretoglobin family 1D member 4 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Scgb1d4provided by RGD
Official Full Name: secretoglobin family 1D member 4provided by RGD
Primary source: RGD:1302961
See related: Ensembl:ENSRNOG00000020301 AllianceGenome:RGD:1302961
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Psbp2; Psbpc2
Summary: Predicted to enable steroid binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SCGB1D1 (secretoglobin family 1D member 1); SCGB1D2 (secretoglobin family 1D member 2); and SCGB1D4 (secretoglobin family 1D member 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:: 1q43

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	1	NC_086019.1 (215755363..215758238)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	1	NC_051336.1 (206330454..206333329)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (225690756..225693631)

Chromosome 1 - NC_086019.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D1Arb49 (e-PCR)
- UniSTS:240139

D1Wox23 (e-PCR)
- UniSTS:117947

BI278669 (e-PCR)
- UniSTS:244442

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables steroid binding	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in extracellular region	TAS Traceable Author Statement more info	PubMed
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: prostatic steroid-binding protein C2

Names: prostate steriod-binding protein 2; prostatein peptide C2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_207593.2 → NP_997476.2 prostatic steroid-binding protein C2 precursor

See identical proteins and their annotated locations for NP_997476.2

Status: VALIDATED

Source sequence(s)

BC099748, V01256

UniProtKB/Swiss-Prot

P02781

UniProtKB/TrEMBL

A6HZZ5, Q499V5

Related

ENSRNOP00000027498.3, ENSRNOT00000027498.4

Conserved Domains (1) summary

cl11457
Location:28 → 90

Secretoglobin; Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical ...