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    Rtl8a retrotransposon Gag like 8A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 679038, updated on 11-Apr-2024

    Summary

    Official Symbol
    Rtl8aprovided by RGD
    Official Full Name
    retrotransposon Gag like 8Aprovided by RGD
    Primary source
    RGD:1593086
    See related
    Ensembl:ENSRNOG00000045535 AllianceGenome:RGD:1593086
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cxx1a; Fam127b
    Summary
    Orthologous to human RTL8A (retrotransposon Gag like 8A). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

    See Rtl8a in Genome Data Viewer
    Location:
    Xq36
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (138436824..138438037, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (133414027..133415240, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (73616371..73617584)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen 55-like Neighboring gene U6 spliceosomal RNA Neighboring gene centrosomal protein 83 like 1 Neighboring gene RIKEN cDNA 4933416I08 gene like

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    uncharacterized protein LOC679038
    Names
    CAAX box 1A
    family with sequence similarity 127, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100998.1NP_001094468.1  uncharacterized protein LOC679038

      See identical proteins and their annotated locations for NP_001094468.1

      Status: PREDICTED

      Source sequence(s)
      BC105915
      UniProtKB/TrEMBL
      Q3KR52
      Related
      ENSRNOP00000077655.1, ENSRNOT00000072066.3
      Conserved Domains (1) summary
      pfam16297
      Location:26113
      DUF4939; Domain of unknown function (DUF4939)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      138436824..138438037 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)