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    CG42699 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31507, updated on 10-May-2024

    Summary

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    Official Symbol
    CG42699provided by FlyBase
    Primary source
    FLYBASE:FBgn0261610
    Locus tag
    Dmel_CG42699
    See related
    AllianceGenome:FB:FBgn0261610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG15770; CG4064; Dmel\CG42699
    Old locus tag
    Dmel_CG15770; Dmel_CG4064
    Summary
    Predicted to be involved in cilium assembly. Predicted to be active in axonemal microtubule; centriole; and centrosome. Is expressed in central brain primordium; embryonic brain; larval ventral nerve cord; organism; and ventral nerve cord primordium. Orthologous to human CEP162 (centrosomal protein 162). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG42699 in Genome Data Viewer
    Location:
    5B8-5C2; 1-14 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5764553..5789576)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5658586..5683609)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR45528 Neighboring gene uncharacterized protein Neighboring gene MAP kinase activated protein-kinase-2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44832 Neighboring gene uncharacterized protein Neighboring gene mir-4963 stem loop

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic and Transcriptomic Associations Identify a New Insecticide Resistance Phenotype for the Selective Sweep at the Cyp6g1 Locus of Drosophila melanogaster. Battlay P, et al. G3 (Bethesda), 2016 Aug 9. PMID 27317781, Free PMC Article
    2. Population genetic evidence for cold adaptation in European Drosophila melanogaster populations. Božičević V, et al. Mol Ecol, 2016 Mar. PMID 26558479
    3. Flexibility in a gene network affecting a simple behavior in Drosophila melanogaster. van Swinderen B, et al. Genetics, 2005 Apr. PMID 15687281, Free PMC Article
    4. A screen for genes expressed in the olfactory organs of Drosophila melanogaster identifies genes involved in olfactory behaviour. Tunstall NE, et al. PLoS One, 2012. PMID 22530061, Free PMC Article
    5. Neuronal remodeling during metamorphosis is regulated by the alan shepard (shep) gene in Drosophila melanogaster. Chen D, et al. Genetics, 2014 Aug. PMID 24931409, Free PMC Article

    See all (35) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in cilium assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in axonemal microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in centriole IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42699-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      5764553..5789576
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132035.3 → NP_572263.2  uncharacterized protein Dmel_CG42699 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572263.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8E755, Q9W474
      Conserved Domains (1) summary
      COG3352
      Location:316 → 423
      FlaC; Archaellum component FlaC [Cell motility]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9W474 Q9W474

    Gene LinkOut

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