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    CG3726 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31525, updated on 10-May-2024

    Summary

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    Official Symbol
    CG3726provided by FlyBase
    Primary source
    FLYBASE:FBgn0029824
    Locus tag
    Dmel_CG3726
    See related
    AllianceGenome:FB:FBgn0029824
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG3726
    Summary
    Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in embryonic brain; embryonic/larval nervous system; larval ventral nerve cord; and organism. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG3726 in Genome Data Viewer
    Location:
    5C7-5C10; 1-14 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (5917097..5941852)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (5811130..5835885)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR44108 Neighboring gene Serine hydroxymethyl transferase Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic basis of aging and life-history evolution in Drosophila melanogaster. Remolina SC, et al. Evolution, 2012 Nov. PMID 23106705, Free PMC Article
    2. Analysis of insect nuclear small heat shock proteins and interacting proteins. Moutaoufik MT, et al. Cell Stress Chaperones, 2021 Jan. PMID 32888179, Free PMC Article
    3. Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution. Quijano C, et al. Genome Biol, 2008. PMID 19087263, Free PMC Article
    4. Combining Developmental and Perturbation-Seq Uncovers Transcriptional Modules Orchestrating Neuronal Remodeling. Alyagor I, et al. Dev Cell, 2018 Oct 8. PMID 30300589, Free PMC Article
    5. The Drosophila Pipsqueak protein defines a new family of helix-turn-helix DNA-binding proteins. Siegmund T, et al. Dev Genes Evol, 2002 Apr. PMID 11976954

    See all (35) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG3726-PA
    CG3726-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      5917097..5941852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001297988.1 → NP_001284917.1  uncharacterized protein Dmel_CG3726, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001284917.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      X2JDV1
      Conserved Domains (3) summary
      smart00225
      Location:32 → 121
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:21 → 118
      BTB; BTB/POZ domain
      pfam05225
      Location:587 → 622
      HTH_psq; helix-turn-helix, Psq domain

    2. NM_132051.2 → NP_572279.1  uncharacterized protein Dmel_CG3726, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572279.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SWW7, Q9W456
      Related
      FBpp0070823
      Conserved Domains (3) summary
      smart00225
      Location:32 → 121
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00651
      Location:21 → 118
      BTB; BTB/POZ domain
      pfam05225
      Location:587 → 622
      HTH_psq; helix-turn-helix, Psq domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SWW7 Q8SWW7
    X2JDV1 X2JDV1

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