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    CG6962 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41436, updated on 10-May-2024

    Summary

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    Official Symbol
    CG6962provided by FlyBase
    Primary source
    FLYBASE:FBgn0037958
    Locus tag
    Dmel_CG6962
    See related
    AllianceGenome:FB:FBgn0037958
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG6962
    Summary
    Predicted to enable sphingomyelin phosphodiesterase D activity. Predicted to be involved in ceramide biosynthetic process; glycerophospholipid catabolic process; and sphingomyelin catabolic process. Is expressed in adult head and organism. Orthologous to human SMPD4 (sphingomyelin phosphodiesterase 4). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG6962 in Genome Data Viewer
    Location:
    87A1-87A1; 3-51 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (11879702..11882534, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (7705424..7708256, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Kynurenine aminotransferase Neighboring gene uncharacterized protein Neighboring gene shadow Neighboring gene uncharacterized protein Neighboring gene methuselah-like 5 Neighboring gene Dynein axonemal light intermediate chain 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables sphingomyelin phosphodiesterase D activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sphingomyelin phosphodiesterase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in glycerophospholipid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sphingomyelin catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG6962-PA
    NP_650124.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      11879702..11882534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141867.4 → NP_650124.1  uncharacterized protein Dmel_CG6962 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VGH0
      Related
      FBpp0081990
      Conserved Domains (1) summary
      pfam14724
      Location:21 → 720
      mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VGH0 Q9VGH0

    Gene LinkOut

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