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    Fam217a family with sequence similarity 217, member A [ Mus musculus (house mouse) ]

    Gene ID: 71864, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Fam217aprovided by MGI
    Official Full Name
    family with sequence similarity 217, member Aprovided by MGI
    Primary source
    MGI:MGI:1919114
    See related
    Ensembl:ENSMUSG00000021414 AllianceGenome:MGI:1919114
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700026J04Rik
    Summary
    Orthologous to human FAM217A (family with sequence similarity 217 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 34.4) See more
    Orthologs
    human all
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    Genomic context

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    See Fam217a in Genome Data Viewer
    Location:
    13 A3.3; 13 14.22 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (35093942..35108341, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (34909959..34924358, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7222 Neighboring gene STARR-positive B cell enhancer ABC_E7223 Neighboring gene ribosomal protein S4, X-linked pseudogene Neighboring gene predicted gene, 36839 Neighboring gene pre-mRNA processing factor 4B Neighboring gene STARR-seq mESC enhancer starr_34164 Neighboring gene testis expressed 56 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene enoyl-Coenzyme A delta isomerase 3 Neighboring gene STARR-seq mESC enhancer starr_34165 Neighboring gene predicted gene, 16984

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    2. Tissue expression patterns identify mouse cilia genes. McClintock TS, et al. Physiol Genomics, 2008 Jan 17. PMID 17971504
    3. The sperm-associated antigen 6 interactome and its role in spermatogenesis. Liu Y, et al. Reproduction, 2019 Aug. PMID 31146259, Free PMC Article
    4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM217A
    Names
    uncharacterized protein C6orf146 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027967.1 → NP_082243.1  protein FAM217A

      Status: VALIDATED

      Source sequence(s)
      AK006388, AK139828
      Consensus CDS
      CCDS56875.1
      UniProtKB/Swiss-Prot
      Q9D9W6
      UniProtKB/TrEMBL
      F8WGE0
      Related
      ENSMUSP00000021851.7, ENSMUST00000021851.8
      Conserved Domains (1) summary
      pfam15344
      Location:206 → 409
      FAM217; FAM217 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      35093942..35108341 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006516783.3 → XP_006516846.1  protein FAM217A isoform X2

      UniProtKB/TrEMBL
      A0A286YD65, Q3UT29
      Related
      ENSMUSP00000153297.2, ENSMUST00000223834.2
      Conserved Domains (1) summary
      pfam15344
      Location:358 → 561
      FAM217; FAM217 family

    2. XM_006516782.3 → XP_006516845.1  protein FAM217A isoform X1

      UniProtKB/TrEMBL
      Q3UT29
      Conserved Domains (1) summary
      pfam15344
      Location:359 → 562
      FAM217; FAM217 family

    3. XM_006516785.3 → XP_006516848.1  protein FAM217A isoform X4

      Conserved Domains (1) summary
      pfam15344
      Location:266 → 469
      FAM217; FAM217 family

    4. XM_006516784.3 → XP_006516847.1  protein FAM217A isoform X3

      Conserved Domains (1) summary
      pfam15344
      Location:267 → 470
      FAM217; FAM217 family

    5. XM_006516786.5 → XP_006516849.1  protein FAM217A isoform X5

      UniProtKB/Swiss-Prot
      Q9D9W6
      Related
      ENSMUSP00000153128.2, ENSMUST00000225242.2
      Conserved Domains (1) summary
      pfam15344
      Location:207 → 410
      FAM217; FAM217 family

    6. XM_011244351.3 → XP_011242653.1  protein FAM217A isoform X7

    7. XM_011244350.3 → XP_011242652.1  protein FAM217A isoform X6

    8. XM_036158176.1 → XP_036014069.1  protein FAM217A isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D9W6.1 GenPept UniProtKB/Swiss-Prot:Q9D9W6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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