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    yciO putative RNA-binding protein YciO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945854, updated on 4-Feb-2024

    Summary

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    Gene symbol
    yciO
    Gene description
    putative RNA-binding protein YciO
    Primary source
    ASAP:ABE-0004254
    Locus tag
    b1267
    See related
    ECOCYC:G6635
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1261
    Summary
    Crystal structures of YciO have been solved at 2.1 and 1.4 resolution. [More information is available at EcoCyc: G6635].
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    Genomic context

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    Sequence:
    NC_000913.3 (1324098..1324718)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene anthranilate synthase subunit TrpD Neighboring gene anthranilate synthase subunit TrpE Neighboring gene trp operon leader peptide Neighboring gene RNase AM Neighboring gene DUF2207 domain-containing protein YciQ Neighboring gene 23S rRNA pseudouridine(2605) synthase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Crystal structure of the YciO protein from Escherichia coli. Jia J, et al. Proteins, 2002 Oct 1. PMID 12211024
    2. [Primary structure of the E. coli DNA region preceding the tryptophan operon genes]. Gubanov VV, et al. Bioorg Khim, 1984 Mar. PMID 6385993
    3. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    4. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    5. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative RNA-binding protein YciO

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1324098..1324718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415783.6 putative RNA-binding protein YciO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415783.6

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376KV48, A0A7D7HGM0
      Conserved Domains (1) summary
      PRK11630
      Location:1 → 206
      PRK11630; threonylcarbamoyl-AMP synthase
    Nucleotide Protein
    Heading Accession and Version

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