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    yciT DNA-binding transcriptional dual regulator YciT [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945869, updated on 6-Oct-2023

    Summary

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    Gene symbol
    yciT
    Gene description
    DNA-binding transcriptional dual regulator YciT
    Primary source
    ASAP:ABE-0004312
    Locus tag
    b1284
    See related
    ECOCYC:G6638
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    deoT; ECK1279
    Summary
    AFMB Structural Genomics target Number 52 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13905]. DeoT belongs to the DeoR family of transcriptional regulators and acts as a global regulator . [More information is available at EcoCyc: G6638].
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    Genomic context

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    Sequence:
    NC_000913.3 (1343597..1344346, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene orotidine-5'-phosphate decarboxylase Neighboring gene putative translation factor Neighboring gene osmotically-inducible lipoprotein OsmB Neighboring gene UPF0509 family protein YciZ Neighboring gene protein YmiD Neighboring gene cyclic di-GMP phosphodiesterase PdeR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DeoT, a DeoR-type transcriptional regulator of multiple target genes. Elgrably-Weiss M, et al. FEMS Microbiol Lett, 2006 Jan. PMID 16451192
    2. Genome-wide screening of genes affecting glycogen metabolism in Escherichia coli K-12. Eydallin G, et al. FEBS Lett, 2007 Jun 26. PMID 17543954
    3. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
    4. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    5. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding transcriptional dual regulator YciT

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1343597..1344346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415800.1 DNA-binding transcriptional dual regulator YciT [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415800.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6NX32
      Conserved Domains (1) summary
      COG1349
      Location:1 → 248
      GlpR; DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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