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    yciF DUF892 domain-containing protein YciF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947133, updated on 6-Oct-2023

    Summary

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    Gene symbol
    yciF
    Gene description
    DUF892 domain-containing protein YciF
    Primary source
    ASAP:ABE-0004222
    Locus tag
    b1258
    See related
    ECOCYC:EG11126
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1252
    Summary
    Protein sequencing reveals ATG at codon 3 is also utilized as a start. [More information is available at EcoGene: EG11126]. YciF is highly conserved across Enterobacteriaceae. [More information is available at EcoCyc: EG11126].
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    Genomic context

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    Sequence:
    NC_000913.3 (1315270..1315770, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane protein W Neighboring gene DUF892 domain-containing protein YciE Neighboring gene stress-induced bacterial acidophilic repeat motifs-containing protein YciG Neighboring gene tryptophan synthase subunit alpha Neighboring gene tryptophan synthase subunit beta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The crystal structure of the E. coli stress protein YciF. Hindupur A, et al. Protein Sci, 2006 Nov. PMID 17001035, Free PMC Article
    2. Escherichia coli stress protein YciF: expression, crystallization and preliminary crystallographic analysis. Liu D, et al. Acta Crystallogr D Biol Crystallogr, 2004 Dec. PMID 15583397
    3. Transcriptional regulation of Salmonella enterica serovar Typhimurium genes by bile. Prouty AM, et al. FEMS Immunol Med Microbiol, 2004 Jun 1. PMID 15145463
    4. Proteins induced by Xanthomonas axonopodis pv. passiflorae with leaf extract of the host plant (Passiflorae edulis). Tahara ST, et al. Proteomics, 2003 Jan. PMID 12548639
    5. Molecular evolution of the Escherichia coli chromosome. I. Analysis of structure and natural variation in a previously uncharacterized region between trp and tonB. Stoltzfus A, et al. Genetics, 1988 Oct. PMID 3058546, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant.
    2. expression, crystallization and preliminary crystallographic analysis of Escherichia coli stress protein YciF
      Title: Escherichia coli stress protein YciF: expression, crystallization and preliminary crystallographic analysis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF892 domain-containing protein YciF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1315270..1315770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415774.1 DUF892 domain-containing protein YciF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415774.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1IW16
      Conserved Domains (1) summary
      COG3685
      Location:1 → 166
      YciE; Ferritin-like metal-binding protein YciE [Inorganic ion transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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