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    elfD putative fimbrial chaperone ElfD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946773, updated on 7-Dec-2023

    Summary

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    Gene symbol
    elfD
    Gene description
    putative fimbrial chaperone ElfD
    Primary source
    ASAP:ABE-0003187
    Locus tag
    b0939
    See related
    ECOCYC:G6481
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0930; ycbR
    Summary
    Probable false positive lipoprotein prediction, Cys not conserved. [More information is available at EcoGene: EG13710]. YcbR is an uncharacterized protein. [More information is available at EcoCyc: G6481].
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    Genomic context

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    Sequence:
    NC_000913.3 (998490..999191)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene aliphatic sulfonate ABC transporter periplasmic binding protein Neighboring gene NADPH-dependent FMN reductase Neighboring gene putative laminin-binding fimbrial subunit Neighboring gene putative fimbrial usher protein ElfC Neighboring gene putative fimbrial-like adhesin protein Neighboring gene putative fimbrial protein YcbU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Escherichia coli ycbQRST operon encodes fimbriae with laminin-binding and epithelial cell adherence properties in Shiga-toxigenic E.  coli O157:H7. Samadder P, et al. Environ Microbiol, 2009 Jul. PMID 19508558, Free PMC Article
    2. Conserved immunoglobulin-like features in a family of periplasmic pilus chaperones in bacteria. Holmgren A, et al. EMBO J, 1992 Apr. PMID 1348692, Free PMC Article
    3. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
    4. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    5. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chaperone-mediated protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative fimbrial chaperone ElfD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      998490..999191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415459.1 putative fimbrial chaperone ElfD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415459.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3W4K3S1, A0A8T6QIC9
      Conserved Domains (1) summary
      COG3121
      Location:5 → 228
      FimC; P pilus assembly protein, chaperone PapD [Extracellular structures]
    Nucleotide Protein
    Heading Accession and Version

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