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    ycbF putative fimbrial chaperone YcbF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945559, updated on 6-Jun-2024

    Summary

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    Gene symbol
    ycbF
    Gene description
    putative fimbrial chaperone YcbF
    Primary source
    ASAP:ABE-0003197
    Locus tag
    b0944
    See related
    ECOCYC:EG12397
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0935
    Summary
    YcbF has Ig-like domains: pfam PF00345 aligns to N-terminal residues 27-150, and pfam PF02753 aligns to C-terminal residues 231-155. [More information is available at EcoGene: EG12397]. YcbF is a hypothetical protein. [More information is available at EcoCyc: EG12397].
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    Genomic context

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    Sequence:
    NC_000913.3 (1003947..1004657)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial usher protein ElfC Neighboring gene putative fimbrial-like adhesin protein Neighboring gene putative fimbrial protein YcbU Neighboring gene putative fimbrial protein YcbV Neighboring gene dihydroorotate dehydrogenase, type 2 Neighboring gene cell division protein ZapC Neighboring gene 6-N-hydroxylaminopurine resistance protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of the pyrD gene of Escherichia coli and characterization of the flavoprotein dihydroorotate dehydrogenase. Larsen JN, et al. Eur J Biochem, 1985 Aug 15. PMID 2992959
    2. Conserved immunoglobulin-like features in a family of periplasmic pilus chaperones in bacteria. Holmgren A, et al. EMBO J, 1992 Apr. PMID 1348692, Free PMC Article
    3. Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. Gurvich OL, et al. EMBO J, 2003 Nov 3. PMID 14592990, Free PMC Article
    4. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
    5. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chaperone-mediated protein folding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in outer membrane-bounded periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative fimbrial chaperone YcbF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1003947..1004657
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415464.4 putative fimbrial chaperone YcbF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415464.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0B1G399, A0A0L6Y4D7, A0A8S7JQK5, A0A8S7U647, A0A8T5ZPT9, A0AAE5R1P4
      Conserved Domains (1) summary
      PRK11385
      Location:1 → 236
      PRK11385; fimbrial chaperone
    Nucleotide Protein
    Heading Accession and Version

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