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    yraJ putative fimbrial usher protein YraJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947656, updated on 4-Apr-2024

    Summary

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    Gene symbol
    yraJ
    Gene description
    putative fimbrial usher protein YraJ
    Primary source
    ASAP:ABE-0010333
    Locus tag
    b3144
    See related
    ECOCYC:G7639
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3132
    Summary
    FimD family.First 40 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12775].
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    Genomic context

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    Sequence:
    NC_000913.3 (3288814..3291330)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial protein YraH Neighboring gene putative fimbrial chaperone YraI Neighboring gene putative fimbrial adhesin YraK Neighboring gene 16S rRNA 2'-O-ribose C1402 methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for a novel domain of bacterial outer membrane ushers. Capitani G, et al. Proteins, 2006 Dec 1. PMID 17066380
    2. Bacterial outer membrane ushers contain distinct targeting and assembly domains for pilus biogenesis. Thanassi DG, et al. J Bacteriol, 2002 Nov. PMID 12399496, Free PMC Article
    3. Analysis of the requirements for pilus biogenesis at the outer membrane usher and the function of the usher C-terminus. So SS, et al. Mol Microbiol, 2006 Apr. PMID 16573686
    4. The outer membrane usher forms a twin-pore secretion complex. Li H, et al. J Mol Biol, 2004 Dec 10. PMID 15561151
    5. Chaperone-subunit-usher interactions required for donor strand exchange during bacterial pilus assembly. Barnhart MM, et al. J Bacteriol, 2003 May. PMID 12700251, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables fimbrial usher porin activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables fimbrial usher porin activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in pilus assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pilus assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative fimbrial usher protein YraJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3288814..3291330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417613.1 putative fimbrial usher protein YraJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417613.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2X1JT58
      Conserved Domains (1) summary
      COG3188
      Location:12 → 838
      FimD; Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]
    Nucleotide Protein
    Heading Accession and Version

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