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    yhbQ DNA damage response nuclease YhbQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947671, updated on 25-Jan-2024

    Summary

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    Gene symbol
    yhbQ
    Gene description
    DNA damage response nuclease YhbQ
    Primary source
    ASAP:ABE-0010370
    Locus tag
    b3155
    See related
    ECOCYC:G7649
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3143
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    Genomic context

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    Sequence:
    NC_000913.3 (3299966..3300268)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative nucleoside-diphosphate-sugar epimerase Neighboring gene protein/nucleic acid deglycase 2 Neighboring gene putative FMN binding protein YhbP Neighboring gene putative N-acetyltransferase YhbS Neighboring gene anaerobic ubiquinone biosynthesis accessory factor UbiT Neighboring gene ubiquinone biosynthesis protein UbiU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli. Kumar A, et al. Cell Rep, 2016 Jan 26. PMID 26774489
    2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 3'-5'-DNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA endonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA damage response nuclease YhbQ
    NP_417624.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3299966..3300268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417624.1 DNA damage response nuclease YhbQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417624.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0FLV9
      Conserved Domains (1) summary
      PRK00329
      Location:1 → 82
      PRK00329; GIY-YIG nuclease superfamily protein; Validated
    Nucleotide Protein
    Heading Accession and Version

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