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    LOC4335860 cellulose synthase-like protein H2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335860, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335860
    Gene description
    cellulose synthase-like protein H2
    Locus tag
    OSNPB_040429500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSLH2; OsCslH2
    Expression
    Ubiquitous expression in flowers (RPKM 41.9), flower buds (RPKM 23.3) and 6 other tissues See more
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    Genomic context

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    See LOC4335860 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21279838..21285506, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 27 Neighboring gene transcription factor bHLH95 Neighboring gene transcription factor bHLH95 Neighboring gene putative cellulose synthase-like protein H3 Neighboring gene nicotinate phosphoribosyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mannan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase-like protein H2
    Names
    LOC_Os04g35020
    OSJNBa0042L16.13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21279838..21285506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779351.2 → XP_015634837.2  cellulose synthase-like protein H2

      UniProtKB/Swiss-Prot
      Q0JD62, Q7XUT9
      Conserved Domains (1) summary
      cl28038
      Location:94 → 771
      Cellulose_synt; Cellulose synthase
    Nucleotide Protein
    Heading Accession and Version

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