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    LOC4333162 EID1-like F-box protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333162, updated on 31-May-2023

    Summary

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    Gene symbol
    LOC4333162
    Gene description
    EID1-like F-box protein 2
    Locus tag
    OSNPB_030427000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 9.5), flower buds (RPKM 7.7) and 6 other tissues See more
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    Genomic context

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    See LOC4333162 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17839953..17844388, complement)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene membrane-anchored ubiquitin-fold protein 1-like Neighboring gene chaperone protein ClpB2, chloroplastic-like Neighboring gene RING finger protein 222 Neighboring gene glutelin type-A 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    EID1-like F-box protein 2
    Names
    Os03g0427000

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17839953..17844388 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774947.2 → XP_015630433.1  EID1-like F-box protein 2

      UniProtKB/TrEMBL
      A0A0P0VYX9, Q75I58

    2. XM_015774946.2 → XP_015630432.1  EID1-like F-box protein 2

      UniProtKB/TrEMBL
      A0A0P0VYX9, Q75I58

    3. XM_015774948.2 → XP_015630434.1  EID1-like F-box protein 2

      UniProtKB/TrEMBL
      A0A0P0VYX9, Q75I58
    Nucleotide Protein
    Heading Accession and Version

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