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    LOC4339369 ATP-dependent 6-phosphofructokinase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339369, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4339369
    Gene description
    ATP-dependent 6-phosphofructokinase 6
    Locus tag
    OSNPB_050524400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 35.7), flower buds (RPKM 31.0) and 6 other tissues See more
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    Genomic context

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    See LOC4339369 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26107200..26112457)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene putative dual specificity protein phosphatase DSP8 Neighboring gene mitochondrial-processing peptidase subunit alpha Neighboring gene putative leucine-rich repeat receptor-like protein kinase At2g19210 Neighboring gene putative leucine-rich repeat receptor-like protein kinase At2g19210

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 6-phosphofructokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 6-phosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent 6-phosphofructokinase 6
    Names
    Os05g0524400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26107200..26112457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784222.2 → XP_015639708.1  ATP-dependent 6-phosphofructokinase 6

      UniProtKB/TrEMBL
      A0A0N7KL42, B8B024, Q65X97
      Conserved Domains (1) summary
      PLN02564
      Location:77 → 557
      PLN02564; 6-phosphofructokinase
    Nucleotide Protein
    Heading Accession and Version

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