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    LOC4335593 wall-associated receptor kinase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335593, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335593
    Gene description
    wall-associated receptor kinase 2
    Locus tag
    OSNPB_040370900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 138.9), roots after flowering (RPKM 100.0) and 1 other tissue See more
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    Genomic context

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    See LOC4335593 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18042194..18049456, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 14 Neighboring gene F-box/LRR-repeat protein 14-like Neighboring gene wall-associated receptor kinase 2 Neighboring gene putative wall-associated receptor kinase-like 16

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    wall-associated receptor kinase 2
    Names
    Os04g0370900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18042194..18049456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781337.2 → XP_015636823.1  wall-associated receptor kinase 2

      UniProtKB/TrEMBL
      A0A0P0W9P1, A0A8J8Y8E7, B7F891, B9FEQ4
      Conserved Domains (3) summary
      smart00220
      Location:436 → 672
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      pfam13947
      Location:39 → 144
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:442 → 700
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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