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    LOC4345681 temperature-induced lipocalin-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345681, updated on 31-May-2023

    Summary

    Gene symbol
    LOC4345681
    Gene description
    temperature-induced lipocalin-1
    Locus tag
    OSNPB_080440100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0528B09.3
    Expression
    Ubiquitous expression in flowers (RPKM 7.1), flower buds (RPKM 6.4) and 6 other tissues See more
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    Genomic context

    See LOC4345681 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (21406635..21408724)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At2g39795, mitochondrial Neighboring gene Golgi SNAP receptor complex member 1-1 Neighboring gene poly(A)-specific ribonuclease PARN-like Neighboring gene probable CCR4-associated factor 1 homolog 7

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    temperature-induced lipocalin-1
    Names
    Os08g0440100
    P0524F03.30
    putative temperature stress-induced lipocalin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21406635..21408724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794665.2XP_015650151.1  temperature-induced lipocalin-1

      UniProtKB/TrEMBL
      Q0J5F0, Q6Z9F9, Q6Z9H9
      Conserved Domains (1) summary
      cd19438
      Location:4152
      lipocalin_Blc-like; bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins