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    LOC4335854 COP9 signalosome complex subunit 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335854, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335854
    Gene description
    COP9 signalosome complex subunit 8
    Locus tag
    OSNPB_040428900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    COP9
    Expression
    Ubiquitous expression in flower buds (RPKM 26.1), flowers (RPKM 24.4) and 6 other tissues See more
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    Genomic context

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    See LOC4335854 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21227202..21230773, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335852 Neighboring gene small nucleolar RNA R44/J54/Z268 family Neighboring gene ribonuclease P protein subunit p25 Neighboring gene dehydration-responsive element-binding protein 1C-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in COP9 signalosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deneddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP9 signalosome complex subunit 8
    Names
    Os04g0428900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21227202..21230773 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778199.2 → XP_015633685.1  COP9 signalosome complex subunit 8

      UniProtKB/TrEMBL
      A0A0P0WAA2, A0A8J8XGD9, B8ATS6, B9FF76, Q0JD68
      Conserved Domains (1) summary
      pfam10075
      Location:39 → 170
      CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    Nucleotide Protein
    Heading Accession and Version

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