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    LOC4349640 probable galacturonosyltransferase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349640, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4349640
    Gene description
    probable galacturonosyltransferase 7
    Locus tag
    OSNPB_110124900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 3.1), flower buds (RPKM 2.2) and 5 other tissues See more
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    Genomic context

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    See LOC4349640 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1136049..1141660, complement)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene protein SCARECROW 1-like Neighboring gene calcium uniporter protein 6, mitochondrial Neighboring gene pentatricopeptide repeat-containing protein At4g21190 Neighboring gene glutathione transferase GST 23-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable galacturonosyltransferase 7
    Names
    Os11g0124900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1136049..1141660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026021649.1 → XP_025877434.1  probable galacturonosyltransferase 7 isoform X1

      UniProtKB/TrEMBL
      B8BIT8
      Conserved Domains (1) summary
      PLN02769
      Location:1 → 649
      PLN02769; Probable galacturonosyltransferase

    2. XM_026021650.1 → XP_025877435.1  probable galacturonosyltransferase 7 isoform X2

      UniProtKB/TrEMBL
      B8BIT8
      Conserved Domains (1) summary
      PLN02769
      Location:1 → 648
      PLN02769; Probable galacturonosyltransferase

    3. XM_015760219.2 → XP_015615705.1  probable galacturonosyltransferase 7 isoform X4

      UniProtKB/TrEMBL
      A0A8J8XGS5, B8BIT8, B9G953, Q0IV01, Q2RB54
      Conserved Domains (1) summary
      PLN02769
      Location:1 → 642
      PLN02769; Probable galacturonosyltransferase

    4. XM_015760218.2 → XP_015615704.1  probable galacturonosyltransferase 7 isoform X3

      UniProtKB/TrEMBL
      B8BIT8
      Conserved Domains (1) summary
      PLN02769
      Location:1 → 643
      PLN02769; Probable galacturonosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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