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    LOC4347239 thylakoidal processing peptidase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347239, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347239
    Gene description
    thylakoidal processing peptidase 1, chloroplastic
    Locus tag
    OSNPB_090453400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 143.9), leaves after flowering (RPKM 44.5) and 4 other tissues See more
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    Genomic context

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    See LOC4347239 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17003038..17005689, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347236 Neighboring gene transmembrane emp24 domain-containing protein p24delta4 Neighboring gene annexin D8 Neighboring gene nuclear pore complex protein NUP58 Neighboring gene dipeptidyl aminopeptidase BI

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal peptide processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thylakoid membrane organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thylakoidal processing peptidase 1, chloroplastic
    Names
    Os09g0453400
    P0488D02.23
    chloroplast thylakoidal processing peptidase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17003038..17005689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756189.2 → XP_015611675.1  thylakoidal processing peptidase 1, chloroplastic

      UniProtKB/TrEMBL
      A2Z1Y4, A3BZH1, Q67UZ3
      Conserved Domains (1) summary
      pfam10502
      Location:233 → 389
      Peptidase_S26; Signal peptidase, peptidase S26
    Nucleotide Protein
    Heading Accession and Version

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