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    LOC4341569 stromal processing peptidase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341569, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341569
    Gene description
    stromal processing peptidase, chloroplastic-like
    Locus tag
    OSNPB_060625400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 258.7), roots after flowering (RPKM 208.5) and 6 other tissues See more
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    Genomic context

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    See LOC4341569 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25200337..25210585, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene protein LYK5 Neighboring gene protein LYK5 Neighboring gene peroxiredoxin-2E-1, chloroplastic-like Neighboring gene probable glucomannan 4-beta-mannosyltransferase 9 Neighboring gene pentatricopeptide repeat-containing protein At4g16470

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stromal processing peptidase, chloroplastic-like
    Names
    OSJNBa0029G06.38-1
    OSJNBa0072A21.7-1
    Os06g0625400
    putative metalloendopeptidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25200337..25210585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787825.1 → XP_015643311.1  stromal processing peptidase, chloroplastic-like isoform X1

      UniProtKB/Swiss-Prot
      A0A0P0WZ97, B7ECD6, B8B0E2, B9FQ02, Q0DAU7, Q69TY5
      Conserved Domains (2) summary
      COG0612
      Location:172 → 408
      PqqL; Predicted Zn-dependent peptidase [General function prediction only]
      pfam05193
      Location:916 → 1140
      Peptidase_M16_C; Peptidase M16 inactive domain

    2. XM_026026130.1 → XP_025881915.1  stromal processing peptidase, chloroplastic-like isoform X2

      Conserved Domains (3) summary
      COG0612
      Location:20 → 160
      PqqL; Predicted Zn-dependent peptidase [General function prediction only]
      pfam05193
      Location:668 → 892
      Peptidase_M16_C; Peptidase M16 inactive domain
      cl25707
      Location:100 → 337
      Peptidase_M16_C; Peptidase M16 inactive domain
    Nucleotide Protein
    Heading Accession and Version

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