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    LOC4332927 uncharacterized LOC4332927 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332927, updated on 21-Jun-2023

    Summary

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    Gene symbol
    LOC4332927
    Gene description
    uncharacterized LOC4332927
    Locus tag
    OSNPB_030369100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 156.7), flowers (RPKM 16.7) and 1 other tissue See more
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    Genomic context

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    See LOC4332927 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14491725..14492433)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene peroxidase 2 Neighboring gene peroxidase 2 Neighboring gene peroxidase 2-like Neighboring gene peroxidase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4332927
    Names
    Os03g0369100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14491725..14492433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773441.2 → XP_015628927.1  uncharacterized protein LOC4332927

      UniProtKB/TrEMBL
      A0A5S6RAL4, A2XH60, A3AIC1, Q10KV4, Q9FRD6
      Conserved Domains (1) summary
      cd04660
      Location:28 → 99
      nsLTP_like; Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium ...
    Nucleotide Protein
    Heading Accession and Version

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