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    LOC4348920 double-stranded RNA-binding protein 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348920, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4348920
    Gene description
    double-stranded RNA-binding protein 6-like
    Locus tag
    OSNPB_100480500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DRB5; DRB6; OsDRB5; OsJ_31914
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 28.5), roots before flowering (RPKM 23.5) and 6 other tissues See more
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    Genomic context

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    See LOC4348920 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (18102761..18108780, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 22-like Neighboring gene homeobox-leucine zipper protein HOX9-like Neighboring gene uncharacterized LOC4348921 Neighboring gene aquaporin PIP2-5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    double-stranded RNA-binding protein 6
    Names
    LOC_Os10g33970
    OSJNBa0093B11.1
    dsRNA-binding protein 5
    dsRNA-binding protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423065.1 → NP_001409994.1  double-stranded RNA-binding protein 6

      Status: VALIDATED

      Source sequence(s)
      AK066524, AP014966, CI473773
      UniProtKB/Swiss-Prot
      A0A0P0XVV3, Q7XDB1, Q9AV50
      UniProtKB/TrEMBL
      B8BHI2

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18102761..18108780 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759293.2 → XP_015614779.1  double-stranded RNA-binding protein 6 isoform X1

      UniProtKB/Swiss-Prot
      Q9AV50
      Conserved Domains (3) summary
      PHA03247
      Location:197 → 492
      PHA03247; large tegument protein UL36; Provisional
      cd19907
      Location:1 → 55
      DSRM_AtDRB-like_rpt1; first double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins
      cd19908
      Location:86 → 154
      DSRM_AtDRB-like_rpt2; second double-stranded RNA binding motif of Arabidopsis thaliana double-stranded RNA-binding proteins (AtDRBs)and similar proteins

    2. XM_026020844.1 → XP_025876629.1  double-stranded RNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      B8BHI2
      Conserved Domains (2) summary
      cd00048
      Location:26 → 91
      DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
      cl26464
      Location:135 → 430
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AV50.1 GenPept UniProtKB/Swiss-Prot:Q9AV50

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