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    LOC4332930 pentatricopeptide repeat-containing protein At1g28690, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332930, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4332930
    Gene description
    pentatricopeptide repeat-containing protein At1g28690, mitochondrial
    Locus tag
    OSNPB_030369700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332930 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14512313..14514163)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene peroxidase 2-like Neighboring gene peroxidase 2 Neighboring gene novel plant SNARE 13 Neighboring gene pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g28690, mitochondrial
    Names
    Os03g0369700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14512313..14514163
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777840.2 → XP_015633326.1  pentatricopeptide repeat-containing protein At1g28690, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0VXU3, A0A5S6RCE1, A2XH66, Q0DRN0, Q10KU9, Q9FRD3
      Conserved Domains (4) summary
      TIGR00756
      Location:225 → 260
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:226 → 254
      PPR; PPR repeat [structural motif]
      pfam01535
      Location:327 → 355
      PPR; PPR repeat
      pfam13041
      Location:325 → 376
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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