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    LOC4327989 uncharacterized LOC4327989 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327989, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327989
    Gene description
    uncharacterized LOC4327989
    Locus tag
    OSNPB_020102400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1435_F07.18
    Expression
    Ubiquitous expression in flower buds (RPKM 29.7), flowers (RPKM 21.2) and 6 other tissues See more
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    Genomic context

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    See LOC4327989 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (127073..130191, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At3g28850 Neighboring gene amino acid permease 3 Neighboring gene thiosulfate sulfurtransferase 18 Neighboring gene phytochrome-interacting ankyrin-repeat protein 2 Neighboring gene small nuclear ribonucleoprotein SmD3b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327989
    Names
    B1370C05.28
    Os02g0102400
    putative ribosomal protein S5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      127073..130191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771319.2 → XP_015626805.1  uncharacterized protein LOC4327989

      UniProtKB/TrEMBL
      A2WZS3, Q6YU81, Q6ZFK6
      Conserved Domains (1) summary
      COG0098
      Location:321 → 497
      RpsE; Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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