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    LOC4341572 pentatricopeptide repeat-containing protein At4g16470 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341572, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4341572
    Gene description
    pentatricopeptide repeat-containing protein At4g16470
    Locus tag
    OSNPB_060625800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341572 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25235825..25238202, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene protein LYK5 Neighboring gene stromal processing peptidase, chloroplastic-like Neighboring gene peroxiredoxin-2E-1, chloroplastic-like Neighboring gene probable glucomannan 4-beta-mannosyltransferase 9 Neighboring gene potassium transporter 10-like Neighboring gene uncharacterized LOC112939414 Neighboring gene cytosolic sulfotransferase 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g16470
    Names
    OSJNBa0072A21.16
    Os06g0625800
    pentatricopeptide (PPR) repeat-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421653.1 → NP_001408582.1  pentatricopeptide repeat-containing protein At4g16470

      Status: VALIDATED

      Source sequence(s)
      AK120023
      UniProtKB/TrEMBL
      A0A0P0WZ21, Q67VS6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25235825..25238202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788220.2 → XP_015643706.1  pentatricopeptide repeat-containing protein At4g16470

      UniProtKB/TrEMBL
      Q67VS6
      Conserved Domains (2) summary
      PLN03081
      Location:9 → 405
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      sd00004
      Location:205 → 233
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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