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    LOC4327739 CBS domain-containing protein CBSX6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327739, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4327739
    Gene description
    CBS domain-containing protein CBSX6
    Locus tag
    OSNPB_010920000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1793G04.3
    Expression
    Ubiquitous expression in flower buds (RPKM 26.7), flowers (RPKM 21.2) and 6 other tissues See more
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    Genomic context

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    See LOC4327739 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40153160..40157604, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene epoxide hydrolase 1 Neighboring gene probable auxin efflux carrier component 5a Neighboring gene stearoyl-[acyl-carrier-protein] 9-desaturase 2, chloroplastic-like Neighboring gene uncharacterized protein At3g27210 Neighboring gene transcription and mRNA export factor ENY2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    CBS domain-containing protein CBSX6
    Names
    CBS domain containing protein-like
    Os01g0920000
    P0678F11.30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      40153160..40157604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766851.1 → XP_015622337.1  CBS domain-containing protein CBSX6

      UniProtKB/TrEMBL
      A0A5S6RB48, A3A0Z6, Q0JGJ8, Q5JJJ9, Q5JLM8
      Conserved Domains (2) summary
      cd02205
      Location:19 → 141
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
      pfam00571
      Location:342 → 395
      CBS; CBS domain
    Nucleotide Protein
    Heading Accession and Version

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