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    LOC4347252 transcription factor HEC2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347252, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4347252
    Gene description
    transcription factor HEC2
    Locus tag
    OSNPB_090455300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1342C04.6
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    Genomic context

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    See LOC4347252 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17132193..17133476)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 Neighboring gene heat stress transcription factor B-4c-like Neighboring gene NF-kappa-B-activating protein Neighboring gene 2-hydroxyisoflavanone dehydratase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, et al. Plant Physiol, 2006 Aug. PMID 16896230, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor HEC2
    Names
    Os09g0455300
    P0025H07.25
    basic helix-loop-helix (bHLH)-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17132193..17133476
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755510.2 → XP_015610996.1  transcription factor HEC2

      UniProtKB/TrEMBL
      A0A0P0XMP7, A2Z200, Q67TR8
      Conserved Domains (1) summary
      cl00081
      Location:148 → 204
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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