U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4332941 protein phosphatase 2C 32 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332941, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4332941
    Gene description
    protein phosphatase 2C 32
    Locus tag
    OSNPB_030372500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 9.4), flower buds (RPKM 6.4) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4332941 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (14656223..14664972)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 709B2-like Neighboring gene transcription factor MYB4 Neighboring gene heavy metal-associated isoprenylated plant protein 43 Neighboring gene protein LTV1 homolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein phosphatase 2C 32
    Names
    Os03g0372500

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      14656223..14664972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776475.2 → XP_015631961.1  protein phosphatase 2C 32

      UniProtKB/TrEMBL
      A0A0P0VXT9, A2XH85, Q84TS1
      Conserved Domains (3) summary
      smart00332
      Location:300 → 370
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain
      cd00143
      Location:672 → 968
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      NF033484
      Location:701 → 782
      Stp1_PP2C_phos; Stp1/IreP family PP2C-type Ser/Thr phosphatase

    2. XM_015776478.2 → XP_015631964.1  protein phosphatase 2C 32

      UniProtKB/TrEMBL
      A0A0P0VXT9, A2XH85, Q84TS1
      Conserved Domains (3) summary
      smart00332
      Location:300 → 370
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain
      cd00143
      Location:672 → 968
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      NF033484
      Location:701 → 782
      Stp1_PP2C_phos; Stp1/IreP family PP2C-type Ser/Thr phosphatase

    3. XM_015776474.2 → XP_015631960.1  protein phosphatase 2C 32

      UniProtKB/TrEMBL
      A0A0P0VXT9, A2XH85, Q84TS1
      Conserved Domains (3) summary
      smart00332
      Location:300 → 370
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain
      cd00143
      Location:672 → 968
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      NF033484
      Location:701 → 782
      Stp1_PP2C_phos; Stp1/IreP family PP2C-type Ser/Thr phosphatase

    4. XM_015776476.2 → XP_015631962.1  protein phosphatase 2C 32

      UniProtKB/TrEMBL
      A0A0P0VXT9, A2XH85, Q84TS1
      Conserved Domains (3) summary
      smart00332
      Location:300 → 370
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain
      cd00143
      Location:672 → 968
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      NF033484
      Location:701 → 782
      Stp1_PP2C_phos; Stp1/IreP family PP2C-type Ser/Thr phosphatase

    5. XM_015776477.2 → XP_015631963.1  protein phosphatase 2C 32

      UniProtKB/TrEMBL
      A0A0P0VXT9, A2XH85, Q84TS1
      Conserved Domains (3) summary
      smart00332
      Location:300 → 370
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain
      cd00143
      Location:672 → 968
      PP2Cc; Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence ...
      NF033484
      Location:701 → 782
      Stp1_PP2C_phos; Stp1/IreP family PP2C-type Ser/Thr phosphatase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases