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    LOC4344575 kelch repeat-containing protein At3g27220 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344575, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344575
    Gene description
    kelch repeat-containing protein At3g27220
    Locus tag
    OSNPB_080128000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1163_G08.35
    Expression
    Biased expression in milk grains (RPKM 5.3), flowers (RPKM 1.6) and 3 other tissues See more
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    Genomic context

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    See LOC4344575 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1600684..1604906)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344573 Neighboring gene glutelin type-A 1-like Neighboring gene uncharacterized LOC4344576 Neighboring gene actin-related protein 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    kelch repeat-containing protein At3g27220
    Names
    Os08g0128000
    kelch repeat-containing protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1600684..1604906
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027326.1 → XP_025883111.1  kelch repeat-containing protein At3g27220 isoform X1

      UniProtKB/TrEMBL
      B8BAF3
      Conserved Domains (3) summary
      PHA03098
      Location:181 → 376
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:103 → 142
      Kelch; KELCH repeat [structural motif]
      pfam13418
      Location:97 → 143
      Kelch_4; Galactose oxidase, central domain

    2. XM_015793403.2 → XP_015648889.1  kelch repeat-containing protein At3g27220 isoform X2

      UniProtKB/TrEMBL
      A3BPA0, B8BAF3, Q6ZK44
      Conserved Domains (3) summary
      PHA03098
      Location:178 → 373
      PHA03098; kelch-like protein; Provisional
      sd00038
      Location:100 → 139
      Kelch; KELCH repeat [structural motif]
      pfam13418
      Location:94 → 140
      Kelch_4; Galactose oxidase, central domain
    Nucleotide Protein
    Heading Accession and Version

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