LOC4341270 protein BZR1 homolog 3-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341270
Gene description: protein BZR1 homolog 3-like
Locus tag: OSNPB_060552300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: BZR3; OsBZR3; P0427B07.9
Expression: Ubiquitous expression in roots before flowering (RPKM 10.0), flowers (RPKM 7.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (20941098..20944260)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed
involved_in brassinosteroid mediated signaling pathway	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein BZR1 homolog 3

Names: LOC_Os06g35900; Protein BRASSINAZOLE-RESISTANT 1 homolog 3; putative mature anther-specific protein LAT61

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001421619.1 → NP_001408548.1 protein BZR1 homolog 3

Status: VALIDATED

Source sequence(s)

AK101229, CI278431, CI490613, CI657293

UniProtKB/Swiss-Prot

A0A0P0WXK8, Q5Z9E5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

20941098..20944260

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015785674.2 → XP_015641160.1 protein BZR1 homolog 3

UniProtKB/Swiss-Prot

Q5Z9E5

Conserved Domains (1) summary

pfam05687
Location:17 → 150

BES1_N; BES1/BZR1 plant transcription factor, N-terminal