LOC4343869 40S ribosomal protein S3-1 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4343869
Gene description: 40S ribosomal protein S3-1
Locus tag: OSNPB_070608500
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 53.9), flowers (RPKM 44.9) and 6 other tissues See more
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (25019532..25021751, complement)

Chromosome 7 - NC_029262.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

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Expression

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Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in translation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of cytosolic small ribosomal subunit	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: 40S ribosomal protein S3-1

Names: OSJNBa0072I06.38; OSJNBb0018L13.2; Os07g0608500; putative 40S ribosomal protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422266.1 → NP_001409195.1 40S ribosomal protein S3-1

Status: VALIDATED

Source sequence(s)

AK066905, CF308075, CF308076

UniProtKB/TrEMBL

A0A0P0X8T6, A2YNK7, A3BM20, Q10HT1, Q6YTY2, Q94LL1

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029262.1 Reference IRGSP-1.0 Primary Assembly

Range

25019532..25021751 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015791630.2 → XP_015647116.1 40S ribosomal protein S3-1

UniProtKB/TrEMBL

Q6YTY2

Conserved Domains (1) summary

PTZ00084
Location:5 → 222

PTZ00084; 40S ribosomal protein S3; Provisional