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    LOC4341266 ras-related protein RIC2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341266, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341266
    Gene description
    ras-related protein RIC2-like
    Locus tag
    OSNPB_060551400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RIC2; SS230; OsJ_21648
    Expression
    Ubiquitous expression in mature seeds (RPKM 87.1), flower buds (RPKM 66.0) and 6 other tissues See more
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    Genomic context

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    See LOC4341266 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20896081..20901758, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341263 Neighboring gene uncharacterized LOC107281172 Neighboring gene uncharacterized LOC4341267 Neighboring gene transfer RNA glutamine (anticodon CUG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsGAP1 functions as a positive regulator of OsRab11-mediated TGN to PM or vacuole trafficking. Heo JB, et al. Plant Cell Physiol, 2005 Dec. PMID 16230331
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras-related protein RIC2
    Names
    GTP-binding protein
    LOC_Os06g35814
    P0659D09.45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421617.1 → NP_001408546.1  ras-related protein RIC2

      Status: VALIDATED

      Source sequence(s)
      AU064909, AU085972, CI263316, CI294220
      UniProtKB/Swiss-Prot
      P40393, Q0DBM2, Q5Z939, Q9ATK6
      UniProtKB/TrEMBL
      A2YDY6

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20896081..20901758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788532.2 → XP_015644018.1  ras-related protein RIC2

      UniProtKB/Swiss-Prot
      P40393
      Conserved Domains (1) summary
      cd01868
      Location:12 → 176
      Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P40393.2 GenPept UniProtKB/Swiss-Prot:P40393

    Gene LinkOut

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    Molecular Biology Databases