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    LOC4341560 cinnamoyl-CoA reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341560, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341560
    Gene description
    cinnamoyl-CoA reductase 1
    Locus tag
    OSNPB_060623600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 19.4), mature seeds (RPKM 17.1) and 6 other tissues See more
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    Genomic context

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    See LOC4341560 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (25087020..25090180, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase 2 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene AT-hook motif nuclear-localized protein 27 Neighboring gene uncharacterized LOC112939439

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cinnamoyl-CoA reductase 1; cinnamoyl-CoA reductase 2
    Names
    OSJNBa0029G06.7
    Os06g0623600
    putative cinnamoyl-CoA reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25087020..25090180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026305.1 → XP_025882090.1  cinnamoyl-CoA reductase 1 isoform X3

      Conserved Domains (1) summary
      cd08958
      Location:11 → 221
      FR_SDR_e; flavonoid reductase (FR), extended (e) SDRs

    2. XM_015785501.2 → XP_015640987.1  cinnamoyl-CoA reductase 1 isoform X1

      UniProtKB/TrEMBL
      A0A0N7KMF6, B8B4P8, B9FPZ7, Q69U02
      Conserved Domains (1) summary
      cd08958
      Location:11 → 298
      FR_SDR_e; flavonoid reductase (FR), extended (e) SDRs

    3. XM_015785502.2 → XP_015640988.1  cinnamoyl-CoA reductase 2 isoform X2

      UniProtKB/TrEMBL
      B8B4P8
      Conserved Domains (1) summary
      cd08958
      Location:1 → 247
      FR_SDR_e; flavonoid reductase (FR), extended (e) SDRs
    Nucleotide Protein
    Heading Accession and Version

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