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    LOC4344266 ethylene-responsive transcription factor RAP2-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344266, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344266
    Gene description
    ethylene-responsive transcription factor RAP2-3
    Locus tag
    OSNPB_070674800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 25.6) and milk grains (RPKM 1.6) See more
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    Genomic context

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    See LOC4344266 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28540697..28541823, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene phylloplanin Neighboring gene 60S ribosomal protein L18-3 Neighboring gene probable acyl-CoA dehydrogenase IBR3 Neighboring gene pectinesterase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor RAP2-3
    Names
    AP2 domain transcription factor EREBP
    Os07g0674800
    P0037D09.18
    P0618H09.16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28540697..28541823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789203.1 → XP_015644689.1  ethylene-responsive transcription factor RAP2-3

      UniProtKB/TrEMBL
      A2YPV8, Q69J87, Q6ZDW4, Q7Y047
      Conserved Domains (1) summary
      smart00380
      Location:71 → 132
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
    Nucleotide Protein
    Heading Accession and Version

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