LOC4326868 bidirectional sugar transporter SWEET2a-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4326868
Gene description: bidirectional sugar transporter SWEET2a-like
Locus tag: OSNPB_010541800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: SWEET2A; OsJ_02136; OsSWEET2a
Expression: Broad expression in flowers (RPKM 10.9), roots before flowering (RPKM 9.2) and 6 other tissues See more
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Genomic context

Location:: chromosome: 1

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	1	NC_029256.1 (19959672..19961954)

Chromosome 1 - NC_029256.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation.
Title: Sheath blight resistance in rice is negatively regulated by WRKY53 via SWEET2a activation.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables sugar transmembrane transporter activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in carbohydrate transport	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: bidirectional sugar transporter SWEET2a

Names: LOC_Os01g36070; OSJNBa0062A24.19; putative MtN3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001406288.1 → NP_001393217.1 bidirectional sugar transporter SWEET2a precursor

Status: VALIDATED

Source sequence(s)

AK104143, CI320824, CI645229

UniProtKB/Swiss-Prot

A0A0P0V3P9, A2WR31, A2ZU53, Q5JJY5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029256.1 Reference IRGSP-1.0 Primary Assembly

Range

19959672..19961954

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015759544.2 → XP_015615030.1 bidirectional sugar transporter SWEET2a

UniProtKB/Swiss-Prot

Q5JJY5

Conserved Domains (2) summary

PRK15048
Location:113 → 148

PRK15048; methyl-accepting chemotaxis protein II; Provisional

cl21610
Location:147 → 227

PQ-loop; PQ loop repeat